ProteinPRS Polygenic Prediction of Plasma Protein Levels
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TARBP2

Olink Explore plasma protein · SNPBoost PRS model

Download PRS model
R2 Full Model
0.032
pearson_coefficent
0.1733
sparsity
187
n_cis_pqtl
11
max_cis_pqtl
rs7295767

Diagnostics

PRS scatter and box plotsenlarge ⤢
PRS scatter and box plots for TARBP2
Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for TARBP2
Regional Manhattan Plotenlarge ⤢
Regional Manhattan plot for TARBP2

Model record

Field
Value
Gene
TARBP2
test_n
10538
sparsity
187
pearson_coefficent
0.173317235948073
SE
0.00983196034684039
P_corr
1.61233266397747e-68
R2 Covariate Model
0.0033
R2 Full Model
0.032
P
4.36692316730664e-73
P_full
6.16955994352929e-210
n_cis_pqtl
11
max_cis_pqtl
rs7295767
rank_max_cis_pqtl
40
mean_pqtl_beta
0.00591839732843648
mean_nopqtl_beta
0.00930899955327237
percentage_pqtl
0.0588235294117647
percentage_nopqtl
0.941176470588235

cis and genome-wide metrics

Field
Value
Gene
TARBP2
test_n_genomewide
10538
sparsity_genomewide
187
pearson_coefficent_genomewide
0.173317235948073
SE_genomewide
0.00983196034684039
P_corr_genomewide
1.61233266397747e-68
R2_covariate_model_genomewide
0.00331411380354707
R2_full_model_genomewide
0.0319540898231038
P_genomewide
4.36692316730664e-73
P_full_genomewide
6.16955994352929e-210
n_cis_pqtl
11
max_cis_pqtl
rs7295767
rank_max_cis_pqtl
40
mean_pqtl_beta
0.00591839732843648
mean_nopqtl_beta
0.00930899955327237
percentage_pqtl
0.0588235294117647
percentage_nopqtl
0.941176470588235
test_n_cis
10538
sparsity_cis
11
pearson_coefficent_cis
0.0505419961559215
SE_cis
0.0099702842652622
P_corr_cis
4.06483881930318e-07
R2_covariate_model_cis
0.00331411380354707
R2_full_model_cis
0.00600301616934595
P_cis
7.42091667969157e-15
P_full_cis
1.1560221777627e-13