STAMBP
Olink Explore plasma protein · SNPBoost PRS model
R2 Full Model
0.046
pearson_coefficent
0.2
sparsity
238
n_cis_pqtl
11
max_cis_pqtl
rs77000353
Diagnostics
PRS scatter and box plotsenlarge ⤢
Genome-wide Manhattan Plotenlarge ⤢
Regional Manhattan Plotenlarge ⤢
Model record
Field
Value
Gene
STAMBP
test_n
10538
sparsity
238
pearson_coefficent
0.199991865897682
SE
0.00972052000718658
P_corr
3.48170043334927e-92
R2 Covariate Model
0.0055
R2 Full Model
0.046
P
4.03472718600925e-106
P_full
1.56774098140151e-252
n_cis_pqtl
11
max_cis_pqtl
rs77000353
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0138527300546379
mean_nopqtl_beta
0.00718340244091538
percentage_pqtl
0.046218487394958
percentage_nopqtl
0.953781512605042
cis and genome-wide metrics
Field
Value
Gene
STAMBP
test_n_genomewide
10538
sparsity_genomewide
238
pearson_coefficent_genomewide
0.199991865897682
SE_genomewide
0.00972052000718658
P_corr_genomewide
3.48170043334927e-92
R2_covariate_model_genomewide
0.00551456344639045
R2_full_model_genomewide
0.0459680277809148
P_genomewide
4.03472718600925e-106
P_full_genomewide
1.56774098140151e-252
n_cis_pqtl
11
max_cis_pqtl
rs77000353
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0138527300546379
mean_nopqtl_beta
0.00718340244091538
percentage_pqtl
0.046218487394958
percentage_nopqtl
0.953781512605042
test_n_cis
10538
sparsity_cis
11
pearson_coefficent_cis
0.0446934227069259
SE_cis
0.00991103386734003
P_corr_cis
6.57207987639661e-06
R2_covariate_model_cis
0.00551456344639045
R2_full_model_cis
0.0073220075673831
P_cis
3.07840295849559e-18
P_full_cis
2.37966194080669e-14