SAA4
Olink Explore plasma protein · SNPBoost PRS model
R2 Full Model
0.0251
pearson_coefficent
0.1568
sparsity
13
n_cis_pqtl
6
max_cis_pqtl
rs147763538
Diagnostics
Genome-wide Manhattan Plotenlarge ⤢
Regional Manhattan Plotenlarge ⤢
Model record
Field
Value
Gene
SAA4
test_n
10538
sparsity
13
pearson_coefficent
0.156815369849857
SE
0.010604340320752
P_corr
6.8916157704498e-49
R2 Covariate Model
2e-04
R2 Full Model
0.0251
P
2.5455275165886e-50
P_full
2.4990591829895e-171
n_cis_pqtl
6
max_cis_pqtl
rs147763538
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0733533418754105
mean_nopqtl_beta
0.0129582902110019
percentage_pqtl
0.461538461538462
percentage_nopqtl
0.538461538461538
cis and genome-wide metrics
Field
Value
Gene
SAA4
test_n_genomewide
10538
sparsity_genomewide
13
pearson_coefficent_genomewide
0.156815369849857
SE_genomewide
0.010604340320752
P_corr_genomewide
6.8916157704498e-49
R2_covariate_model_genomewide
0.000156626845583152
R2_full_model_genomewide
0.0250788403807013
P_genomewide
2.5455275165886e-50
P_full_genomewide
2.4990591829895e-171
n_cis_pqtl
6
max_cis_pqtl
rs147763538
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0733533418754105
mean_nopqtl_beta
0.0129582902110019
percentage_pqtl
0.461538461538462
percentage_nopqtl
0.538461538461538
test_n_cis
10538
sparsity_cis
6
pearson_coefficent_cis
0.151862331420171
SE_cis
0.0106126478867891
P_corr_cis
6.34074034143325e-46
R2_covariate_model_cis
0.000156626845583152
R2_full_model_cis
0.0235354713793832
P_cis
2.41032363751933e-47
P_full_cis
9.01031995256839e-164