ProteinPRS Polygenic Prediction of Plasma Protein Levels
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PF4

Olink Explore plasma protein · SNPBoost PRS model

Download PRS model
R2 Full Model
0.0919
pearson_coefficent
0.2993
sparsity
431
n_cis_pqtl
10
max_cis_pqtl
rs74499711

Diagnostics

PRS scatter and box plotsenlarge ⤢
PRS scatter and box plots for PF4
Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for PF4
Regional Manhattan Plotenlarge ⤢
Regional Manhattan plot for PF4

Model record

Field
Value
Gene
PF4
test_n
10538
sparsity
431
pearson_coefficent
0.29929814236518
SE
0.0102835884846595
P_corr
1.03608846912965e-177
R2 Covariate Model
0.0056
R2 Full Model
0.0919
P
9.55764347507677e-183
P_full
0
n_cis_pqtl
10
max_cis_pqtl
rs74499711
rank_max_cis_pqtl
2
mean_pqtl_beta
0.0226538066889254
mean_nopqtl_beta
0.0112947321386537
percentage_pqtl
0.0232018561484919
percentage_nopqtl
0.976798143851508

cis and genome-wide metrics

Field
Value
Gene
PF4
test_n_genomewide
10538
sparsity_genomewide
431
pearson_coefficent_genomewide
0.29929814236518
SE_genomewide
0.0102835884846595
P_corr_genomewide
1.03608846912965e-177
R2_covariate_model_genomewide
0.00560084330017063
R2_full_model_genomewide
0.0918990908865883
P_genomewide
9.55764347507677e-183
P_full_genomewide
0
n_cis_pqtl
10
max_cis_pqtl
rs74499711
rank_max_cis_pqtl
2
mean_pqtl_beta
0.0226538066889254
mean_nopqtl_beta
0.0112947321386537
percentage_pqtl
0.0232018561484919
percentage_nopqtl
0.976798143851508
test_n_cis
10538
sparsity_cis
10
pearson_coefficent_cis
0.0792361230371503
SE_cis
0.0107437530942463
P_corr_cis
1.79465818084914e-13
R2_covariate_model_cis
0.00560084330017097
R2_full_model_cis
0.0107850650776626
P_cis
1.51558341785958e-22
P_full_cis
3.97815601923966e-21