ProteinPRS Polygenic Prediction of Plasma Protein Levels
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PALM

Olink Explore plasma protein · SNPBoost PRS model

Download PRS model
R2 Full Model
0.157
pearson_coefficent
0.3081
sparsity
723
n_cis_pqtl
35
max_cis_pqtl
rs117967619

Diagnostics

PRS scatter and box plotsenlarge ⤢
PRS scatter and box plots for PALM
Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for PALM
Regional Manhattan Plotenlarge ⤢
Regional Manhattan plot for PALM

Model record

Field
Value
Gene
PALM
test_n
10538
sparsity
723
pearson_coefficent
0.308076365245101
SE
0.0102647659233837
P_corr
2.72127085461922e-188
R2 Covariate Model
0.0711
R2 Full Model
0.157
P
1.66880539388042e-308
P_full
0
n_cis_pqtl
35
max_cis_pqtl
rs117967619
rank_max_cis_pqtl
2
mean_pqtl_beta
0.0100617583990452
mean_nopqtl_beta
0.00392903538723667
percentage_pqtl
0.0484094052558783
percentage_nopqtl
0.951590594744122

cis and genome-wide metrics

Field
Value
Gene
PALM
test_n_genomewide
10538
sparsity_genomewide
723
pearson_coefficent_genomewide
0.308076365245101
SE_genomewide
0.0102647659233837
P_corr_genomewide
2.72127085461922e-188
R2_covariate_model_genomewide
0.0711024230336939
R2_full_model_genomewide
0.157026382398634
P_genomewide
1.11253692925363e-308
P_full_genomewide
0
n_cis_pqtl
35
max_cis_pqtl
rs117967619
rank_max_cis_pqtl
2
mean_pqtl_beta
0.0100617583990452
mean_nopqtl_beta
0.00392903538723667
percentage_pqtl
0.0484094052558783
percentage_nopqtl
0.951590594744122
test_n_cis
10538
sparsity_cis
35
pearson_coefficent_cis
0.152140725885347
SE_cis
0.0106639492535293
P_corr_cis
1.16798007832966e-45
R2_covariate_model_cis
0.0711024230336937
R2_full_model_cis
0.0928905479350371
P_cis
1.44812112710321e-184
P_full_cis
6.22883607081596e-171