ProteinPRS Polygenic Prediction of Plasma Protein Levels
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OCLN

Olink Explore plasma protein · SNPBoost PRS model

Download PRS model
R2 Full Model
0.0973
pearson_coefficent
0.1385
sparsity
56
n_cis_pqtl
5
max_cis_pqtl
rs78811453

Diagnostics

PRS scatter and box plotsenlarge ⤢
PRS scatter and box plots for OCLN
Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for OCLN
Regional Manhattan Plotenlarge ⤢
Regional Manhattan plot for OCLN

Model record

Field
Value
Gene
OCLN
test_n
10538
sparsity
56
pearson_coefficent
0.138452107318334
SE
0.0106522099063234
P_corr
2.88287463474336e-38
R2 Covariate Model
0.079
R2 Full Model
0.0973
P
1.62589078042039e-195
P_full
6.55376688654367e-98
n_cis_pqtl
5
max_cis_pqtl
rs78811453
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0405872998993934
mean_nopqtl_beta
0.00550834843077217
percentage_pqtl
0.0892857142857143
percentage_nopqtl
0.910714285714286

cis and genome-wide metrics

Field
Value
Gene
OCLN
test_n_genomewide
10538
sparsity_genomewide
56
pearson_coefficent_genomewide
0.138452107318334
SE_genomewide
0.0106522099063234
P_corr_genomewide
2.88287463474336e-38
R2_covariate_model_genomewide
0.0789997153512008
R2_full_model_genomewide
0.097294584144363
P_genomewide
1.62589078042039e-195
P_full_genomewide
6.55376688654367e-98
n_cis_pqtl
5
max_cis_pqtl
rs78811453
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0405872998993934
mean_nopqtl_beta
0.00550834843077217
percentage_pqtl
0.0892857142857143
percentage_nopqtl
0.910714285714286
test_n_cis
10538
sparsity_cis
5
pearson_coefficent_cis
0.11070345377359
SE_cis
0.0106896868982979
P_corr_cis
5.49496596884831e-25
R2_covariate_model_cis
0.0789997153512008
R2_full_model_cis
0.0907426825815487
P_cis
5.90482731004071e-182
P_full_cis
7.06221405286824e-58