ProteinPRS Polygenic Prediction of Plasma Protein Levels
← All proteins

NTRK3

Olink Explore plasma protein · SNPBoost PRS model

Download PRS model
R2 Full Model
0.1766
pearson_coefficent
0.3716
sparsity
1263
n_cis_pqtl
33
max_cis_pqtl
rs117970302

Diagnostics

PRS scatter and box plotsenlarge ⤢
PRS scatter and box plots for NTRK3
Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for NTRK3
Regional Manhattan Plotenlarge ⤢
Regional Manhattan plot for NTRK3

Model record

Field
Value
Gene
NTRK3
test_n
10538
sparsity
1263
pearson_coefficent
0.371609892902147
SE
0.00912909459687531
P_corr
0
R2 Covariate Model
0.045
R2 Full Model
0.1766
P
0
P_full
0
n_cis_pqtl
33
max_cis_pqtl
rs117970302
rank_max_cis_pqtl
1
mean_pqtl_beta
0.00578598870545582
mean_nopqtl_beta
0.00252115742283505
percentage_pqtl
0.0261282660332542
percentage_nopqtl
0.973871733966746

cis and genome-wide metrics

Field
Value
Gene
NTRK3
test_n_genomewide
10538
sparsity_genomewide
1263
pearson_coefficent_genomewide
0.371609892902147
SE_genomewide
0.00912909459687531
P_corr_genomewide
0
R2_covariate_model_genomewide
0.0450087471313823
R2_full_model_genomewide
0.176560789479222
P_genomewide
0
P_full_genomewide
0
n_cis_pqtl
33
max_cis_pqtl
rs117970302
rank_max_cis_pqtl
1
mean_pqtl_beta
0.00578598870545582
mean_nopqtl_beta
0.00252115742283505
percentage_pqtl
0.0261282660332542
percentage_nopqtl
0.973871733966746
test_n_cis
10538
sparsity_cis
33
pearson_coefficent_cis
0.146715941969117
SE_cis
0.00972685572697616
P_corr_cis
7.20498985471634e-51
R2_covariate_model_cis
0.0450087471313823
R2_full_model_cis
0.0676044137719851
P_cis
7.65105188144466e-160
P_full_cis
1.8773110884177e-183