ProteinPRS Polygenic Prediction of Plasma Protein Levels
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MPRIP

Olink Explore plasma protein · SNPBoost PRS model

Download PRS model
R2 Full Model
0.0246
pearson_coefficent
0.1558
sparsity
105
n_cis_pqtl
2
max_cis_pqtl
rs140965547

Diagnostics

PRS scatter and box plotsenlarge ⤢
PRS scatter and box plots for MPRIP
Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for MPRIP
Regional Manhattan Plotenlarge ⤢
Regional Manhattan plot for MPRIP

Model record

Field
Value
Gene
MPRIP
test_n
10538
sparsity
105
pearson_coefficent
0.155833560048352
SE
0.0106348603749399
P_corr
4.85008639901055e-48
R2 Covariate Model
2e-04
R2 Full Model
0.0246
P
1.34167641238199e-49
P_full
5.44410562746111e-114
n_cis_pqtl
2
max_cis_pqtl
rs140965547
rank_max_cis_pqtl
4
mean_pqtl_beta
0.0120917854924862
mean_nopqtl_beta
0.0049593857339171
percentage_pqtl
0.0190476190476191
percentage_nopqtl
0.980952380952381

cis and genome-wide metrics

Field
Value
Gene
MPRIP
test_n_genomewide
10538
sparsity_genomewide
105
pearson_coefficent_genomewide
0.155833560048352
SE_genomewide
0.0106348603749399
P_corr_genomewide
4.85008639901055e-48
R2_covariate_model_genomewide
0.000151156438712996
R2_full_model_genomewide
0.0245913575074644
P_genomewide
1.34167641238199e-49
P_full_genomewide
5.44410562746111e-114
n_cis_pqtl
2
max_cis_pqtl
rs140965547
rank_max_cis_pqtl
4
mean_pqtl_beta
0.0120917854924862
mean_nopqtl_beta
0.0049593857339171
percentage_pqtl
0.0190476190476191
percentage_nopqtl
0.980952380952381
test_n_cis
10538
sparsity_cis
2
pearson_coefficent_cis
0.0173211860232016
SE_cis
0.0107647746303762
P_corr_cis
0.107639451592361
R2_covariate_model_cis
0.000151156438713107
R2_full_model_cis
0.000436546270368376
P_cis
0.0092583447808235
P_full_cis
0.00246749426197604