ProteinPRS Polygenic Prediction of Plasma Protein Levels
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MIF

Olink Explore plasma protein · SNPBoost PRS model

Download PRS model
R2 Full Model
0.0531
pearson_coefficent
0.22
sparsity
332
n_cis_pqtl
9
max_cis_pqtl
rs4822455

Diagnostics

PRS scatter and box plotsenlarge ⤢
PRS scatter and box plots for MIF
Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for MIF
Regional Manhattan Plotenlarge ⤢
Regional Manhattan plot for MIF

Model record

Field
Value
Gene
MIF
test_n
10538
sparsity
332
pearson_coefficent
0.220023470182462
SE
0.00964136464092029
P_corr
1.7718888938152e-112
R2 Covariate Model
0.0031
R2 Full Model
0.0531
P
1.67289489757263e-123
P_full
0
n_cis_pqtl
9
max_cis_pqtl
rs4822455
rank_max_cis_pqtl
3
mean_pqtl_beta
0.015980769213656
mean_nopqtl_beta
0.0071214961356024
percentage_pqtl
0.0271084337349398
percentage_nopqtl
0.97289156626506

cis and genome-wide metrics

Field
Value
Gene
MIF
test_n_genomewide
10538
sparsity_genomewide
332
pearson_coefficent_genomewide
0.220023470182462
SE_genomewide
0.00964136464092029
P_corr_genomewide
1.7718888938152e-112
R2_covariate_model_genomewide
0.00305115857835381
R2_full_model_genomewide
0.053074929788463
P_genomewide
1.67289489757263e-123
P_full_genomewide
0
n_cis_pqtl
9
max_cis_pqtl
rs4822455
rank_max_cis_pqtl
3
mean_pqtl_beta
0.015980769213656
mean_nopqtl_beta
0.0071214961356024
percentage_pqtl
0.0271084337349398
percentage_nopqtl
0.97289156626506
test_n_cis
10538
sparsity_cis
9
pearson_coefficent_cis
0.0805534299725428
SE_cis
0.00985144688144205
P_corr_cis
3.25970038793837e-16
R2_covariate_model_cis
0.00305115857835381
R2_full_model_cis
0.00991586979981163
P_cis
5.08619650730766e-24
P_full_cis
8.6095972402054e-45