ProteinPRS Polygenic Prediction of Plasma Protein Levels
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LTBR

Olink Explore plasma protein · SNPBoost PRS model

Download PRS model
R2 Full Model
0.2072
pearson_coefficent
0.3945
sparsity
593
n_cis_pqtl
31
max_cis_pqtl
rs41332645

Diagnostics

PRS scatter and box plotsenlarge ⤢
PRS scatter and box plots for LTBR
Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for LTBR
Regional Manhattan Plotenlarge ⤢
Regional Manhattan plot for LTBR

Model record

Field
Value
Gene
LTBR
test_n
10538
sparsity
593
pearson_coefficent
0.394474518035041
SE
0.00910210405004554
P_corr
0
R2 Covariate Model
0.0555
R2 Full Model
0.2072
P
0
P_full
0
n_cis_pqtl
31
max_cis_pqtl
rs41332645
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0211733930613542
mean_nopqtl_beta
0.00364410711041533
percentage_pqtl
0.0522765598650928
percentage_nopqtl
0.947723440134907

cis and genome-wide metrics

Field
Value
Gene
LTBR
test_n_genomewide
10538
sparsity_genomewide
593
pearson_coefficent_genomewide
0.394474518035041
SE_genomewide
0.00910210405004554
P_corr_genomewide
0
R2_covariate_model_genomewide
0.0555198140444877
R2_full_model_genomewide
0.207175015250942
P_genomewide
0
P_full_genomewide
0
n_cis_pqtl
31
max_cis_pqtl
rs41332645
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0211733930613542
mean_nopqtl_beta
0.00364410711041533
percentage_pqtl
0.0522765598650928
percentage_nopqtl
0.947723440134907
test_n_cis
10538
sparsity_cis
31
pearson_coefficent_cis
0.255335661704047
SE_cis
0.00957702241339794
P_corr_cis
1.91140699536617e-151
R2_covariate_model_cis
0.0555198140444877
R2_full_model_cis
0.119614921031618
P_cis
9.99219239455229e-285
P_full_cis
0