ProteinPRS Polygenic Prediction of Plasma Protein Levels
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IFNGR1

Olink Explore plasma protein · SNPBoost PRS model

Download PRS model
R2 Full Model
0.1556
pearson_coefficent
0.3418
sparsity
804
n_cis_pqtl
8
max_cis_pqtl
rs17181562

Diagnostics

PRS scatter and box plotsenlarge ⤢
PRS scatter and box plots for IFNGR1
Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for IFNGR1
Regional Manhattan Plotenlarge ⤢
Regional Manhattan plot for IFNGR1

Model record

Field
Value
Gene
IFNGR1
test_n
10538
sparsity
804
pearson_coefficent
0.341751556082971
SE
0.00926768056920542
P_corr
1.09483791873995e-279
R2 Covariate Model
0.0389
R2 Full Model
0.1556
P
0
P_full
0
n_cis_pqtl
8
max_cis_pqtl
rs17181562
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0193058419110233
mean_nopqtl_beta
0.00251034509889124
percentage_pqtl
0.0099502487562189
percentage_nopqtl
0.990049751243781

cis and genome-wide metrics

Field
Value
Gene
IFNGR1
test_n_genomewide
10538
sparsity_genomewide
804
pearson_coefficent_genomewide
0.341751556082971
SE_genomewide
0.00926768056920542
P_corr_genomewide
1.09483791873995e-279
R2_covariate_model_genomewide
0.0389357937169459
R2_full_model_genomewide
0.15558319633497
P_genomewide
0
P_full_genomewide
0
n_cis_pqtl
8
max_cis_pqtl
rs17181562
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0193058419110233
mean_nopqtl_beta
0.00251034509889124
percentage_pqtl
0.0099502487562189
percentage_nopqtl
0.990049751243781
test_n_cis
10538
sparsity_cis
8
pearson_coefficent_cis
0.137465647630747
SE_cis
0.00976781503775697
P_corr_cis
1.43413622237067e-44
R2_covariate_model_cis
0.0389357937169457
R2_full_model_cis
0.0572811996197408
P_cis
1.23666428697035e-134
P_full_cis
4.34772906923001e-135