GNPDA1
Olink Explore plasma protein · SNPBoost PRS model
R2 Full Model
0.0376
pearson_coefficent
0.1846
sparsity
196
n_cis_pqtl
9
max_cis_pqtl
rs12189346
Diagnostics
PRS scatter and box plotsenlarge ⤢
Genome-wide Manhattan Plotenlarge ⤢
Regional Manhattan Plotenlarge ⤢
Model record
Field
Value
Gene
GNPDA1
test_n
10538
sparsity
196
pearson_coefficent
0.184648976844388
SE
0.0106991035689108
P_corr
1.28482568555595e-65
R2 Covariate Model
0.0032
R2 Full Model
0.0376
P
4.12841049745395e-73
P_full
1.11166074672511e-225
n_cis_pqtl
9
max_cis_pqtl
rs12189346
rank_max_cis_pqtl
5
mean_pqtl_beta
0.00844546116216436
mean_nopqtl_beta
0.00500124439597886
percentage_pqtl
0.0459183673469388
percentage_nopqtl
0.954081632653061
cis and genome-wide metrics
Field
Value
Gene
GNPDA1
test_n_genomewide
10538
sparsity_genomewide
196
pearson_coefficent_genomewide
0.184648976844388
SE_genomewide
0.0106991035689108
P_corr_genomewide
1.28482568555595e-65
R2_covariate_model_genomewide
0.00319041129095754
R2_full_model_genomewide
0.0376080393118494
P_genomewide
4.12841049745395e-73
P_full_genomewide
1.11166074672511e-225
n_cis_pqtl
9
max_cis_pqtl
rs12189346
rank_max_cis_pqtl
5
mean_pqtl_beta
0.00844546116216436
mean_nopqtl_beta
0.00500124439597886
percentage_pqtl
0.0459183673469388
percentage_nopqtl
0.954081632653061
test_n_cis
10538
sparsity_cis
9
pearson_coefficent_cis
0.0759592575874749
SE_cis
0.010854847163512
P_corr_cis
2.80028131912058e-12
R2_covariate_model_cis
0.00319041129095765
R2_full_model_cis
0.00903769478829664
P_cis
4.56718277241115e-19
P_full_cis
1.97031155371983e-26