ProteinPRS Polygenic Prediction of Plasma Protein Levels
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FXYD5

Olink Explore plasma protein · SNPBoost PRS model

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R2 Full Model
0.0743
pearson_coefficent
0.2748
sparsity
91
n_cis_pqtl
10
max_cis_pqtl
rs12110

Diagnostics

PRS scatter and box plotsenlarge ⤢
PRS scatter and box plots for FXYD5
Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for FXYD5
Regional Manhattan Plotenlarge ⤢
Regional Manhattan plot for FXYD5

Model record

Field
Value
Gene
FXYD5
test_n
10538
sparsity
91
pearson_coefficent
0.27482411428953
SE
0.00957766483251913
P_corr
3.96855701182723e-174
R2 Covariate Model
-9e-04
R2 Full Model
0.0743
P
1.43130077564249e-171
P_full
0
n_cis_pqtl
10
max_cis_pqtl
rs12110
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0380995904125213
mean_nopqtl_beta
0.00759559817608227
percentage_pqtl
0.10989010989011
percentage_nopqtl
0.89010989010989

cis and genome-wide metrics

Field
Value
Gene
FXYD5
test_n_genomewide
10538
sparsity_genomewide
91
pearson_coefficent_genomewide
0.27482411428953
SE_genomewide
0.00957766483251913
P_corr_genomewide
3.96855701182723e-174
R2_covariate_model_genomewide
-0.000887992430378626
R2_full_model_genomewide
0.0742995474519068
P_genomewide
1.43130077564249e-171
P_full_genomewide
0
n_cis_pqtl
10
max_cis_pqtl
rs12110
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0380995904125213
mean_nopqtl_beta
0.00759559817608227
percentage_pqtl
0.10989010989011
percentage_nopqtl
0.89010989010989
test_n_cis
10538
sparsity_cis
10
pearson_coefficent_cis
0.255998939289595
SE_cis
0.00962928934267475
P_corr_cis
1.43707275779755e-150
R2_covariate_model_cis
-0.000887992430378626
R2_full_model_cis
0.0640012584311867
P_cis
2.93628895118797e-147
P_full_cis
0