ProteinPRS Polygenic Prediction of Plasma Protein Levels
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DEFB4A_DEFB4B

Olink Explore plasma protein · SNPBoost PRS model

Download PRS model
R2 Full Model
0.1808
pearson_coefficent
0.3017
sparsity
710
n_cis_pqtl
0
max_cis_pqtl
—

Diagnostics

Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for DEFB4A_DEFB4B

Model record

Field
Value
Gene
DEFB4A_DEFB4B
test_n
10538
sparsity
710
pearson_coefficent
0.301685552834667
SE
0.00950276726305323
P_corr
6.89382565746145e-211
R2 Covariate Model
0.099
R2 Full Model
0.1808
P
0
P_full
0
n_cis_pqtl
0
max_cis_pqtl
—
rank_max_cis_pqtl
—
mean_pqtl_beta
—
mean_nopqtl_beta
—
percentage_pqtl
0
percentage_nopqtl
0

cis and genome-wide metrics

Field
Value
Gene
DEFB4A_DEFB4B
test_n_genomewide
10538
sparsity_genomewide
710
pearson_coefficent_genomewide
0.301685552834667
SE_genomewide
0.00950276726305323
P_corr_genomewide
6.89382565746145e-211
R2_covariate_model_genomewide
0.0989540297923076
R2_full_model_genomewide
0.180797826267542
P_genomewide
0
P_full_genomewide
0
n_cis_pqtl
0
max_cis_pqtl
NA
rank_max_cis_pqtl
NA
mean_pqtl_beta
NA
mean_nopqtl_beta
NA
percentage_pqtl
0
percentage_nopqtl
0
test_n_cis
NA
sparsity_cis
NA
pearson_coefficent_cis
NA
SE_cis
NA
P_corr_cis
NA
R2_covariate_model_cis
NA
R2_full_model_cis
NA
P_cis
NA
P_full_cis
NA