ProteinPRS Polygenic Prediction of Plasma Protein Levels
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CXCL11

Olink Explore plasma protein · SNPBoost PRS model

Download PRS model
R2 Full Model
0.1414
pearson_coefficent
0.3363
sparsity
843
n_cis_pqtl
30
max_cis_pqtl
rs116437607

Diagnostics

PRS scatter and box plotsenlarge ⤢
PRS scatter and box plots for CXCL11
Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for CXCL11
Regional Manhattan Plotenlarge ⤢
Regional Manhattan plot for CXCL11

Model record

Field
Value
Gene
CXCL11
test_n
10538
sparsity
843
pearson_coefficent
0.336259596048732
SE
0.00926066724637642
P_corr
7.98215779657065e-272
R2 Covariate Model
0.027
R2 Full Model
0.1414
P
0
P_full
0
n_cis_pqtl
30
max_cis_pqtl
rs116437607
rank_max_cis_pqtl
1
mean_pqtl_beta
0.029589417171692
mean_nopqtl_beta
0.00910349429807771
percentage_pqtl
0.0355871886120997
percentage_nopqtl
0.9644128113879

cis and genome-wide metrics

Field
Value
Gene
CXCL11
test_n_genomewide
10538
sparsity_genomewide
843
pearson_coefficent_genomewide
0.336259596048732
SE_genomewide
0.00926066724637642
P_corr_genomewide
7.98215779657065e-272
R2_covariate_model_genomewide
0.0270356369300564
R2_full_model_genomewide
0.141384547617765
P_genomewide
0
P_full_genomewide
0
n_cis_pqtl
30
max_cis_pqtl
rs116437607
rank_max_cis_pqtl
1
mean_pqtl_beta
0.029589417171692
mean_nopqtl_beta
0.00910349429807771
percentage_pqtl
0.0355871886120997
percentage_nopqtl
0.9644128113879
test_n_cis
10538
sparsity_cis
30
pearson_coefficent_cis
0.174024867500232
SE_cis
0.00968322152508155
P_corr_cis
3.892181129527e-71
R2_covariate_model_cis
0.0270356369300563
R2_full_model_cis
0.0595315784505341
P_cis
7.15408969052199e-141
P_full_cis
8.47249855270085e-192