ProteinPRS Polygenic Prediction of Plasma Protein Levels
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CSF1

Olink Explore plasma protein · SNPBoost PRS model

Download PRS model
R2 Full Model
0.1059
pearson_coefficent
0.284
sparsity
640
n_cis_pqtl
35
max_cis_pqtl
rs1058885

Diagnostics

PRS scatter and box plotsenlarge ⤢
PRS scatter and box plots for CSF1
Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for CSF1
Regional Manhattan Plotenlarge ⤢
Regional Manhattan plot for CSF1

Model record

Field
Value
Gene
CSF1
test_n
10538
sparsity
640
pearson_coefficent
0.283988674577398
SE
0.00945541564527814
P_corr
4.78725027750482e-190
R2 Covariate Model
0.0273
R2 Full Model
0.1059
P
8.41224579761405e-254
P_full
0
n_cis_pqtl
35
max_cis_pqtl
rs1058885
rank_max_cis_pqtl
5
mean_pqtl_beta
0.0060129028296428
mean_nopqtl_beta
0.00346022090846148
percentage_pqtl
0.0546875
percentage_nopqtl
0.9453125

cis and genome-wide metrics

Field
Value
Gene
CSF1
test_n_genomewide
10538
sparsity_genomewide
640
pearson_coefficent_genomewide
0.283988674577398
SE_genomewide
0.00945541564527814
P_corr_genomewide
4.78725027750482e-190
R2_covariate_model_genomewide
0.0272819918870293
R2_full_model_genomewide
0.105893487884624
P_genomewide
8.41224579761405e-254
P_full_genomewide
0
n_cis_pqtl
35
max_cis_pqtl
rs1058885
rank_max_cis_pqtl
5
mean_pqtl_beta
0.0060129028296428
mean_nopqtl_beta
0.00346022090846148
percentage_pqtl
0.0546875
percentage_nopqtl
0.9453125
test_n_cis
10538
sparsity_cis
35
pearson_coefficent_cis
0.148484357614833
SE_cis
0.00975211781916796
P_corr_cis
8.72703218122466e-52
R2_covariate_model_cis
0.0272819918870292
R2_full_model_cis
0.0493403257002358
P_cis
8.93682896527784e-118
P_full_cis
8.08852090425848e-176