ProteinPRS Polygenic Prediction of Plasma Protein Levels
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CLEC4G

Olink Explore plasma protein · SNPBoost PRS model

Download PRS model
R2 Full Model
0.1882
pearson_coefficent
0.4146
sparsity
1069
n_cis_pqtl
39
max_cis_pqtl
rs117034642

Diagnostics

PRS scatter and box plotsenlarge ⤢
PRS scatter and box plots for CLEC4G
Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for CLEC4G
Regional Manhattan Plotenlarge ⤢
Regional Manhattan plot for CLEC4G

Model record

Field
Value
Gene
CLEC4G
test_n
10538
sparsity
1069
pearson_coefficent
0.414637114393035
SE
0.00900271327825901
P_corr
0
R2 Covariate Model
0.0193
R2 Full Model
0.1882
P
0
P_full
0
n_cis_pqtl
39
max_cis_pqtl
rs117034642
rank_max_cis_pqtl
2
mean_pqtl_beta
0.00803320395557466
mean_nopqtl_beta
0.00384298818122857
percentage_pqtl
0.0364826941066417
percentage_nopqtl
0.963517305893358

cis and genome-wide metrics

Field
Value
Gene
CLEC4G
test_n_genomewide
10538
sparsity_genomewide
1069
pearson_coefficent_genomewide
0.414637114393035
SE_genomewide
0.00900271327825901
P_corr_genomewide
0
R2_covariate_model_genomewide
0.0192500362042191
R2_full_model_genomewide
0.188205818734145
P_genomewide
0
P_full_genomewide
0
n_cis_pqtl
39
max_cis_pqtl
rs117034642
rank_max_cis_pqtl
2
mean_pqtl_beta
0.00803320395557466
mean_nopqtl_beta
0.00384298818122857
percentage_pqtl
0.0364826941066417
percentage_nopqtl
0.963517305893358
test_n_cis
10538
sparsity_cis
39
pearson_coefficent_cis
0.16278766451028
SE_cis
0.00976126988512832
P_corr_cis
1.25525231598456e-61
R2_covariate_model_cis
0.0192500362042191
R2_full_model_cis
0.0456029140463498
P_cis
6.09264590801794e-106
P_full_cis
2.91405574756652e-192