ProteinPRS Polygenic Prediction of Plasma Protein Levels
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CD300LF

Olink Explore plasma protein · SNPBoost PRS model

Download PRS model
R2 Full Model
0.5333
pearson_coefficent
0.6909
sparsity
1027
n_cis_pqtl
60
max_cis_pqtl
rs2034310

Diagnostics

PRS scatter and box plotsenlarge ⤢
PRS scatter and box plots for CD300LF
Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for CD300LF
Regional Manhattan Plotenlarge ⤢
Regional Manhattan plot for CD300LF

Model record

Field
Value
Gene
CD300LF
test_n
10538
sparsity
1027
pearson_coefficent
0.690890286389546
SE
0.00711662680969748
P_corr
0
R2 Covariate Model
0.1046
R2 Full Model
0.5333
P
0
P_full
0
n_cis_pqtl
60
max_cis_pqtl
rs2034310
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0371897257181004
mean_nopqtl_beta
0.0048466789832046
percentage_pqtl
0.0584225900681597
percentage_nopqtl
0.94157740993184

cis and genome-wide metrics

Field
Value
Gene
CD300LF
test_n_genomewide
10538
sparsity_genomewide
1027
pearson_coefficent_genomewide
0.690890286389546
SE_genomewide
0.00711662680969748
P_corr_genomewide
0
R2_covariate_model_genomewide
0.104595706199788
R2_full_model_genomewide
0.533265506223614
P_genomewide
0
P_full_genomewide
0
n_cis_pqtl
60
max_cis_pqtl
rs2034310
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0371897257181004
mean_nopqtl_beta
0.0048466789832046
percentage_pqtl
0.0584225900681597
percentage_nopqtl
0.94157740993184
test_n_cis
10538
sparsity_cis
60
pearson_coefficent_cis
0.668102339652496
SE_cis
0.0073244259488191
P_corr_cis
0
R2_covariate_model_cis
0.104595706199788
R2_full_model_cis
0.506658727940074
P_cis
0
P_full_cis
0