ProteinPRS Polygenic Prediction of Plasma Protein Levels
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CD160

Olink Explore plasma protein · SNPBoost PRS model

Download PRS model
R2 Full Model
0.1955
pearson_coefficent
0.4285
sparsity
793
n_cis_pqtl
36
max_cis_pqtl
rs148311134

Diagnostics

PRS scatter and box plotsenlarge ⤢
PRS scatter and box plots for CD160
Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for CD160
Regional Manhattan Plotenlarge ⤢
Regional Manhattan plot for CD160

Model record

Field
Value
Gene
CD160
test_n
10538
sparsity
793
pearson_coefficent
0.428490105982377
SE
0.00888309400396286
P_corr
0
R2 Covariate Model
0.0174
R2 Full Model
0.1955
P
0
P_full
0
n_cis_pqtl
36
max_cis_pqtl
rs148311134
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0259430065987628
mean_nopqtl_beta
0.00522232824336094
percentage_pqtl
0.0453972257250946
percentage_nopqtl
0.954602774274905

cis and genome-wide metrics

Field
Value
Gene
CD160
test_n_genomewide
10538
sparsity_genomewide
793
pearson_coefficent_genomewide
0.428490105982377
SE_genomewide
0.00888309400396286
P_corr_genomewide
0
R2_covariate_model_genomewide
0.0174396028089885
R2_full_model_genomewide
0.19552045192462
P_genomewide
0
P_full_genomewide
0
n_cis_pqtl
36
max_cis_pqtl
rs148311134
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0259430065987628
mean_nopqtl_beta
0.00522232824336094
percentage_pqtl
0.0453972257250946
percentage_nopqtl
0.954602774274905
test_n_cis
10538
sparsity_cis
36
pearson_coefficent_cis
0.293554171637514
SE_cis
0.00939821780980844
P_corr_cis
9.40206317741865e-205
R2_covariate_model_cis
0.0174396028089885
R2_full_model_cis
0.100505487965614
P_cis
6.58768238965145e-242
P_full_cis
0