ProteinPRS Polygenic Prediction of Plasma Protein Levels
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CD109

Olink Explore plasma protein · SNPBoost PRS model

Download PRS model
R2 Full Model
0.4647
pearson_coefficent
0.6661
sparsity
636
n_cis_pqtl
67
max_cis_pqtl
rs2351528

Diagnostics

PRS scatter and box plotsenlarge ⤢
PRS scatter and box plots for CD109
Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for CD109
Regional Manhattan Plotenlarge ⤢
Regional Manhattan plot for CD109

Model record

Field
Value
Gene
CD109
test_n
10538
sparsity
636
pearson_coefficent
0.666120418537768
SE
0.00736440977574828
P_corr
0
R2 Covariate Model
0.0221
R2 Full Model
0.4647
P
0
P_full
0
n_cis_pqtl
67
max_cis_pqtl
rs2351528
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0160939606010536
mean_nopqtl_beta
0.00312572685147774
percentage_pqtl
0.105345911949686
percentage_nopqtl
0.894654088050315

cis and genome-wide metrics

Field
Value
Gene
CD109
test_n_genomewide
10538
sparsity_genomewide
636
pearson_coefficent_genomewide
0.666120418537768
SE_genomewide
0.00736440977574828
P_corr_genomewide
0
R2_covariate_model_genomewide
0.0221221928314453
R2_full_model_genomewide
0.464682653758926
P_genomewide
0
P_full_genomewide
0
n_cis_pqtl
67
max_cis_pqtl
rs2351528
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0160939606010536
mean_nopqtl_beta
0.00312572685147774
percentage_pqtl
0.105345911949686
percentage_nopqtl
0.894654088050315
test_n_cis
10538
sparsity_cis
67
pearson_coefficent_cis
0.619502364443315
SE_cis
0.00775097964949422
P_corr_cis
0
R2_covariate_model_cis
0.0221221928314453
R2_full_model_cis
0.405778270047017
P_cis
0
P_full_cis
0