BST2
Olink Explore plasma protein · SNPBoost PRS model
R2 Full Model
0.1541
pearson_coefficent
0.3593
sparsity
1138
n_cis_pqtl
30
max_cis_pqtl
rs10413817
Diagnostics
PRS scatter and box plotsenlarge ⤢
Genome-wide Manhattan Plotenlarge ⤢
Regional Manhattan Plotenlarge ⤢
Model record
Field
Value
Gene
BST2
test_n
10538
sparsity
1138
pearson_coefficent
0.359337077104699
SE
0.00917647973962264
P_corr
1.66882330634905e-308
R2 Covariate Model
0.0301
R2 Full Model
0.1541
P
0
P_full
0
n_cis_pqtl
30
max_cis_pqtl
rs10413817
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0130078129130762
mean_nopqtl_beta
0.00634192384271815
percentage_pqtl
0.0263620386643234
percentage_nopqtl
0.973637961335677
cis and genome-wide metrics
Field
Value
Gene
BST2
test_n_genomewide
10538
sparsity_genomewide
1138
pearson_coefficent_genomewide
0.359337077104699
SE_genomewide
0.00917647973962264
P_corr_genomewide
1.11257275419089e-308
R2_covariate_model_genomewide
0.0300804725168274
R2_full_model_genomewide
0.154097665434693
P_genomewide
0
P_full_genomewide
0
n_cis_pqtl
30
max_cis_pqtl
rs10413817
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0130078129130762
mean_nopqtl_beta
0.00634192384271815
percentage_pqtl
0.0263620386643234
percentage_nopqtl
0.973637961335677
test_n_cis
10538
sparsity_cis
30
pearson_coefficent_cis
0.0960456049684536
SE_cis
0.00978780494689296
P_corr_cis
1.24517282002363e-22
R2_covariate_model_cis
0.0300804725168274
R2_full_model_cis
0.0394444432868625
P_cis
7.71613841526764e-93
P_full_cis
3.15378715056592e-66