ProteinPRS Polygenic Prediction of Plasma Protein Levels
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UPK3BL1

Olink Explore plasma protein · SNPBoost PRS model

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R2 Full Model
0.0017
pearson_coefficent
0.058
sparsity
2
n_cis_pqtl
0
max_cis_pqtl
—

Diagnostics

Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for UPK3BL1
Regional Manhattan Plotenlarge ⤢
Regional Manhattan plot for UPK3BL1

Model record

Field
Value
Gene
UPK3BL1
test_n
10538
sparsity
2
pearson_coefficent
0.0580470332753894
SE
0.010826960334862
P_corr
8.47739722156357e-08
R2 Covariate Model
-4e-04
R2 Full Model
0.0017
P
6.39263923862326e-05
P_full
7.36789521824718e-05
n_cis_pqtl
0
max_cis_pqtl
—
rank_max_cis_pqtl
—
mean_pqtl_beta
—
mean_nopqtl_beta
0.0192823591076406
percentage_pqtl
0
percentage_nopqtl
1

cis and genome-wide metrics

Field
Value
Gene
UPK3BL1
test_n_genomewide
10538
sparsity_genomewide
2
pearson_coefficent_genomewide
0.0580470332753894
SE_genomewide
0.010826960334862
P_corr_genomewide
8.47739722156357e-08
R2_covariate_model_genomewide
-0.000447571351421594
R2_full_model_genomewide
0.00167271010388059
P_genomewide
6.39263923862326e-05
P_full_genomewide
7.36789521824718e-05
n_cis_pqtl
0
max_cis_pqtl
NA
rank_max_cis_pqtl
NA
mean_pqtl_beta
NA
mean_nopqtl_beta
0.0192823591076406
percentage_pqtl
0
percentage_nopqtl
1
test_n_cis
NA
sparsity_cis
NA
pearson_coefficent_cis
NA
SE_cis
NA
P_corr_cis
NA
R2_covariate_model_cis
NA
R2_full_model_cis
NA
P_cis
NA
P_full_cis
NA