ProteinPRS Polygenic Prediction of Plasma Protein Levels
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TYMP

Olink Explore plasma protein · SNPBoost PRS model

Download PRS model
R2 Full Model
0.0267
pearson_coefficent
0.1598
sparsity
96
n_cis_pqtl
8
max_cis_pqtl
rs131813

Diagnostics

PRS scatter and box plotsenlarge ⤢
PRS scatter and box plots for TYMP
Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for TYMP
Regional Manhattan Plotenlarge ⤢
Regional Manhattan plot for TYMP

Model record

Field
Value
Gene
TYMP
test_n
10538
sparsity
96
pearson_coefficent
0.159836594441985
SE
0.00978281268302124
P_corr
2.97015776998514e-59
R2 Covariate Model
0.0017
R2 Full Model
0.0267
P
1.5026345000759e-62
P_full
4.22234662154934e-204
n_cis_pqtl
8
max_cis_pqtl
rs131813
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0241112865959536
mean_nopqtl_beta
0.00747355766534828
percentage_pqtl
0.0833333333333333
percentage_nopqtl
0.916666666666667

cis and genome-wide metrics

Field
Value
Gene
TYMP
test_n_genomewide
10538
sparsity_genomewide
96
pearson_coefficent_genomewide
0.159836594441985
SE_genomewide
0.00978281268302124
P_corr_genomewide
2.97015776998514e-59
R2_covariate_model_genomewide
0.00173554759520356
R2_full_model_genomewide
0.0267474869249186
P_genomewide
1.5026345000759e-62
P_full_genomewide
4.22234662154934e-204
n_cis_pqtl
8
max_cis_pqtl
rs131813
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0241112865959536
mean_nopqtl_beta
0.00747355766534828
percentage_pqtl
0.0833333333333333
percentage_nopqtl
0.916666666666667
test_n_cis
10538
sparsity_cis
8
pearson_coefficent_cis
0.124451217757302
SE_cis
0.00983317882748715
P_corr_cis
1.94217898270508e-36
R2_covariate_model_cis
0.00173554759520356
R2_full_model_cis
0.0165323741457342
P_cis
2.20831755616458e-39
P_full_cis
3.76321798733271e-126