ProteinPRS Polygenic Prediction of Plasma Protein Levels
← All proteins

PRTFDC1

Olink Explore plasma protein · SNPBoost PRS model

Download PRS model
R2 Full Model
0.0427
pearson_coefficent
0.2087
sparsity
126
n_cis_pqtl
13
max_cis_pqtl
rs143356584

Diagnostics

PRS scatter and box plotsenlarge ⤢
PRS scatter and box plots for PRTFDC1
Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for PRTFDC1
Regional Manhattan Plotenlarge ⤢
Regional Manhattan plot for PRTFDC1

Model record

Field
Value
Gene
PRTFDC1
test_n
10538
sparsity
126
pearson_coefficent
0.208693081209816
SE
0.00976322844374356
P_corr
3.60555055057761e-99
R2 Covariate Model
-0.0015
R2 Full Model
0.0427
P
3.07435762930159e-97
P_full
5.94269033759816e-256
n_cis_pqtl
13
max_cis_pqtl
rs143356584
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0918921087523852
mean_nopqtl_beta
0.0128683132124297
percentage_pqtl
0.103174603174603
percentage_nopqtl
0.896825396825397

cis and genome-wide metrics

Field
Value
Gene
PRTFDC1
test_n_genomewide
10538
sparsity_genomewide
126
pearson_coefficent_genomewide
0.208693081209816
SE_genomewide
0.00976322844374356
P_corr_genomewide
3.60555055057761e-99
R2_covariate_model_genomewide
-0.00149274832548207
R2_full_model_genomewide
0.0426725355449884
P_genomewide
3.07435762930159e-97
P_full_genomewide
5.94269033759816e-256
n_cis_pqtl
13
max_cis_pqtl
rs143356584
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0918921087523852
mean_nopqtl_beta
0.0128683132124297
percentage_pqtl
0.103174603174603
percentage_nopqtl
0.896825396825397
test_n_cis
10538
sparsity_cis
13
pearson_coefficent_cis
0.175896470301415
SE_cis
0.00982739431714889
P_corr_cis
1.50265666456111e-70
R2_covariate_model_cis
-0.00149274832548207
R2_full_model_cis
0.0298847946532889
P_cis
2.49575065783305e-68
P_full_cis
8.27745389806147e-160