ProteinPRS Polygenic Prediction of Plasma Protein Levels
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PRKAB1

Olink Explore plasma protein · SNPBoost PRS model

Download PRS model
R2 Full Model
0.0671
pearson_coefficent
0.2513
sparsity
515
n_cis_pqtl
10
max_cis_pqtl
rs11064881

Diagnostics

PRS scatter and box plotsenlarge ⤢
PRS scatter and box plots for PRKAB1
Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for PRKAB1
Regional Manhattan Plotenlarge ⤢
Regional Manhattan plot for PRKAB1

Model record

Field
Value
Gene
PRKAB1
test_n
10538
sparsity
515
pearson_coefficent
0.251323795925401
SE
0.00964150186465556
P_corr
5.16325172863798e-145
R2 Covariate Model
0.0046
R2 Full Model
0.0671
P
2.39110728987367e-154
P_full
0
n_cis_pqtl
10
max_cis_pqtl
rs11064881
rank_max_cis_pqtl
1
mean_pqtl_beta
0.036576826803345
mean_nopqtl_beta
0.00599401510508998
percentage_pqtl
0.0194174757281553
percentage_nopqtl
0.980582524271845

cis and genome-wide metrics

Field
Value
Gene
PRKAB1
test_n_genomewide
10538
sparsity_genomewide
515
pearson_coefficent_genomewide
0.251323795925401
SE_genomewide
0.00964150186465556
P_corr_genomewide
5.16325172863798e-145
R2_covariate_model_genomewide
0.00462327895543691
R2_full_model_genomewide
0.0671063735198636
P_genomewide
2.39110728987367e-154
P_full_genomewide
0
n_cis_pqtl
10
max_cis_pqtl
rs11064881
rank_max_cis_pqtl
1
mean_pqtl_beta
0.036576826803345
mean_nopqtl_beta
0.00599401510508998
percentage_pqtl
0.0194174757281553
percentage_nopqtl
0.980582524271845
test_n_cis
10538
sparsity_cis
10
pearson_coefficent_cis
0.123395857091647
SE_cis
0.00988509827646473
P_corr_cis
1.6904383953944e-35
R2_covariate_model_cis
0.00462327895543691
R2_full_model_cis
0.0196773209472553
P_cis
1.27134970370103e-45
P_full_cis
7.86902657339785e-108