PDZD2
Olink Explore plasma protein · SNPBoost PRS model
R2 Full Model
0.0391
pearson_coefficent
0.1929
sparsity
130
n_cis_pqtl
9
max_cis_pqtl
rs183711
Diagnostics
PRS scatter and box plotsenlarge ⤢
Genome-wide Manhattan Plotenlarge ⤢
Regional Manhattan Plotenlarge ⤢
Model record
Field
Value
Gene
PDZD2
test_n
10538
sparsity
130
pearson_coefficent
0.192925955812038
SE
0.0107142089742863
P_corr
3.74392828984352e-71
R2 Covariate Model
0.0012
R2 Full Model
0.0391
P
1.71231727090847e-75
P_full
1.74277055568859e-233
n_cis_pqtl
9
max_cis_pqtl
rs183711
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0272306440177339
mean_nopqtl_beta
0.00712944091335392
percentage_pqtl
0.0692307692307692
percentage_nopqtl
0.930769230769231
cis and genome-wide metrics
Field
Value
Gene
PDZD2
test_n_genomewide
10538
sparsity_genomewide
130
pearson_coefficent_genomewide
0.192925955812038
SE_genomewide
0.0107142089742863
P_corr_genomewide
3.74392828984352e-71
R2_covariate_model_genomewide
0.00123010023684211
R2_full_model_genomewide
0.0391429820161536
P_genomewide
1.71231727090847e-75
P_full_genomewide
1.74277055568859e-233
n_cis_pqtl
9
max_cis_pqtl
rs183711
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0272306440177339
mean_nopqtl_beta
0.00712944091335392
percentage_pqtl
0.0692307692307692
percentage_nopqtl
0.930769230769231
test_n_cis
10538
sparsity_cis
9
pearson_coefficent_cis
0.152030638256559
SE_cis
0.0107924183974134
P_corr_cis
1.47110326976644e-44
R2_covariate_model_cis
0.00123010023684211
R2_full_model_cis
0.0250591884600666
P_cis
9.2674806168003e-49
P_full_cis
2.38391478018416e-143