ProteinPRS Polygenic Prediction of Plasma Protein Levels
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OSCAR

Olink Explore plasma protein · SNPBoost PRS model

Download PRS model
R2 Full Model
0.3603
pearson_coefficent
0.5846
sparsity
1853
n_cis_pqtl
53
max_cis_pqtl
rs138658963

Diagnostics

PRS scatter and box plotsenlarge ⤢
PRS scatter and box plots for OSCAR
Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for OSCAR
Regional Manhattan Plotenlarge ⤢
Regional Manhattan plot for OSCAR

Model record

Field
Value
Gene
OSCAR
test_n
10538
sparsity
1853
pearson_coefficent
0.584584251389653
SE
0.00801416721114088
P_corr
0
R2 Covariate Model
0.0176
R2 Full Model
0.3603
P
0
P_full
0
n_cis_pqtl
53
max_cis_pqtl
rs138658963
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0257122190090455
mean_nopqtl_beta
0.00327953147626485
percentage_pqtl
0.0286022665947113
percentage_nopqtl
0.971397733405289

cis and genome-wide metrics

Field
Value
Gene
OSCAR
test_n_genomewide
10538
sparsity_genomewide
1853
pearson_coefficent_genomewide
0.584584251389653
SE_genomewide
0.00801416721114088
P_corr_genomewide
0
R2_covariate_model_genomewide
0.0176414203734984
R2_full_model_genomewide
0.360259130341367
P_genomewide
0
P_full_genomewide
0
n_cis_pqtl
53
max_cis_pqtl
rs138658963
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0257122190090455
mean_nopqtl_beta
0.00327953147626485
percentage_pqtl
0.0286022665947113
percentage_nopqtl
0.971397733405289
test_n_cis
10538
sparsity_cis
53
pearson_coefficent_cis
0.500257057351697
SE_cis
0.00855294004138513
P_corr_cis
0
R2_covariate_model_cis
0.0176414203734984
R2_full_model_cis
0.270783027712609
P_cis
0
P_full_cis
0