ProteinPRS Polygenic Prediction of Plasma Protein Levels
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LMNB2

Olink Explore plasma protein · SNPBoost PRS model

Download PRS model
R2 Full Model
0.0798
pearson_coefficent
0.098
sparsity
42
n_cis_pqtl
3
max_cis_pqtl
rs76437746

Diagnostics

PRS scatter and box plotsenlarge ⤢
PRS scatter and box plots for LMNB2
Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for LMNB2
Regional Manhattan Plotenlarge ⤢
Regional Manhattan plot for LMNB2

Model record

Field
Value
Gene
LMNB2
test_n
10538
sparsity
42
pearson_coefficent
0.0980462909556547
SE
0.0107039746022122
P_corr
6.39557185043309e-20
R2 Covariate Model
0.07
R2 Full Model
0.0798
P
3.22094965696595e-159
P_full
1.57950866284207e-81
n_cis_pqtl
3
max_cis_pqtl
rs76437746
rank_max_cis_pqtl
15
mean_pqtl_beta
0.00200980780163727
mean_nopqtl_beta
0.00596845936897228
percentage_pqtl
0.0714285714285714
percentage_nopqtl
0.928571428571429

cis and genome-wide metrics

Field
Value
Gene
LMNB2
test_n_genomewide
10538
sparsity_genomewide
42
pearson_coefficent_genomewide
0.0980462909556547
SE_genomewide
0.0107039746022122
P_corr_genomewide
6.39557185043309e-20
R2_covariate_model_genomewide
0.0700435342348582
R2_full_model_genomewide
0.0797646827178821
P_genomewide
3.22094965696595e-159
P_full_genomewide
1.57950866284207e-81
n_cis_pqtl
3
max_cis_pqtl
rs76437746
rank_max_cis_pqtl
15
mean_pqtl_beta
0.00200980780163727
mean_nopqtl_beta
0.00596845936897228
percentage_pqtl
0.0714285714285714
percentage_nopqtl
0.928571428571429
test_n_cis
10538
sparsity_cis
3
pearson_coefficent_cis
0.0231583721317887
SE_cis
0.0107529129841468
P_corr_cis
0.0312925585156198
R2_covariate_model_cis
0.0700435342348582
R2_full_model_cis
0.0708411602878434
P_cis
8.23454102107068e-141
P_full_cis
4.40763150011314e-08