ProteinPRS Polygenic Prediction of Plasma Protein Levels
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CTSF

Olink Explore plasma protein · SNPBoost PRS model

Download PRS model
R2 Full Model
0.2621
pearson_coefficent
0.4629
sparsity
1639
n_cis_pqtl
56
max_cis_pqtl
rs143313688

Diagnostics

PRS scatter and box plotsenlarge ⤢
PRS scatter and box plots for CTSF
Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for CTSF
Regional Manhattan Plotenlarge ⤢
Regional Manhattan plot for CTSF

Model record

Field
Value
Gene
CTSF
test_n
10538
sparsity
1639
pearson_coefficent
0.462913366096342
SE
0.00875270860399958
P_corr
0
R2 Covariate Model
0.0575
R2 Full Model
0.2621
P
0
P_full
0
n_cis_pqtl
56
max_cis_pqtl
rs143313688
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0174277890518195
mean_nopqtl_beta
0.00506595185077925
percentage_pqtl
0.0341671751067724
percentage_nopqtl
0.965832824893227

cis and genome-wide metrics

Field
Value
Gene
CTSF
test_n_genomewide
10538
sparsity_genomewide
1639
pearson_coefficent_genomewide
0.462913366096342
SE_genomewide
0.00875270860399958
P_corr_genomewide
0
R2_covariate_model_genomewide
0.0575398938950165
R2_full_model_genomewide
0.262122447793538
P_genomewide
0
P_full_genomewide
0
n_cis_pqtl
56
max_cis_pqtl
rs143313688
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0174277890518195
mean_nopqtl_beta
0.00506595185077925
percentage_pqtl
0.0341671751067724
percentage_nopqtl
0.965832824893227
test_n_cis
10538
sparsity_cis
56
pearson_coefficent_cis
0.187455565134445
SE_cis
0.00969936354553173
P_corr_cis
9.04229145235857e-82
R2_covariate_model_cis
0.0575398938950167
R2_full_model_cis
0.0933237197025857
P_cis
1.35079809407459e-220
P_full_cis
1.1136898002118e-241