ProteinPRS Polygenic Prediction of Plasma Protein Levels
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CALCOCO1

Olink Explore plasma protein · SNPBoost PRS model

Download PRS model
R2 Full Model
0.0276
pearson_coefficent
0.1611
sparsity
166
n_cis_pqtl
6
max_cis_pqtl
rs3741659

Diagnostics

PRS scatter and box plotsenlarge ⤢
PRS scatter and box plots for CALCOCO1
Genome-wide Manhattan Plotenlarge ⤢
Genome-wide Manhattan plot for CALCOCO1
Regional Manhattan Plotenlarge ⤢
Regional Manhattan plot for CALCOCO1

Model record

Field
Value
Gene
CALCOCO1
test_n
10538
sparsity
166
pearson_coefficent
0.161086781292376
SE
0.00972461120041861
P_corr
7.6336496929723e-61
R2 Covariate Model
0.0029
R2 Full Model
0.0276
P
3.24567844299054e-65
P_full
1.30283654197073e-199
n_cis_pqtl
6
max_cis_pqtl
rs3741659
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0286052235748085
mean_nopqtl_beta
0.0112361956684223
percentage_pqtl
0.036144578313253
percentage_nopqtl
0.963855421686747

cis and genome-wide metrics

Field
Value
Gene
CALCOCO1
test_n_genomewide
10538
sparsity_genomewide
166
pearson_coefficent_genomewide
0.161086781292376
SE_genomewide
0.00972461120041861
P_corr_genomewide
7.6336496929723e-61
R2_covariate_model_genomewide
0.00292004577871041
R2_full_model_genomewide
0.0276410945274239
P_genomewide
3.24567844299054e-65
P_full_genomewide
1.30283654197073e-199
n_cis_pqtl
6
max_cis_pqtl
rs3741659
rank_max_cis_pqtl
1
mean_pqtl_beta
0.0286052235748085
mean_nopqtl_beta
0.0112361956684223
percentage_pqtl
0.036144578313253
percentage_nopqtl
0.963855421686747
test_n_cis
10538
sparsity_cis
6
pearson_coefficent_cis
0.0692380436783637
SE_cis
0.00982964652500599
P_corr_cis
1.99022783347242e-12
R2_covariate_model_cis
0.00292004577871041
R2_full_model_cis
0.00719950427125138
P_cis
1.71852668922493e-18
P_full_cis
3.35478261340428e-38